diff --git a/cmd/master.go b/cmd/master.go
index 5b345e98da655f624e271335c649147f7f411502..e8db8e3c0581541c787e679d81024edef6c5d15d 100644
--- a/cmd/master.go
+++ b/cmd/master.go
@@ -37,6 +37,7 @@ var masterCmd = &cobra.Command{
 		runChecks(check.MASTER, filename)
 		writeOutput(controlsCollection)
 	},
+	Deprecated: "this command will be retired soon. Please use the `run` command with `--targets=master` instead.",
 }
 
 func init() {
diff --git a/cmd/node.go b/cmd/node.go
index 707bff66dc3fe4572be44a9ba39e333616fddea0..4eb13db8ffd276b2ec9350b5412950ed9b60f18d 100644
--- a/cmd/node.go
+++ b/cmd/node.go
@@ -37,6 +37,7 @@ var nodeCmd = &cobra.Command{
 		runChecks(check.NODE, filename)
 		writeOutput(controlsCollection)
 	},
+	Deprecated: "this command will be retired soon. Please use the `run` command with `--targets=node` instead.",
 }
 
 func init() {
diff --git a/job-master.yaml b/job-master.yaml
index ad6be4037dc82e417feeb06747512a6bcb5979c7..415450670f0b31aa32c0930e026358787fb38581 100644
--- a/job-master.yaml
+++ b/job-master.yaml
@@ -16,7 +16,7 @@ spec:
       containers:
         - name: kube-bench
           image: aquasec/kube-bench:latest
-          command: ["kube-bench", "master"]
+          command: ["kube-bench", "run", "--targets=master"]
           volumeMounts:
             - name: var-lib-etcd
               mountPath: /var/lib/etcd
diff --git a/job-node.yaml b/job-node.yaml
index 7160f4ad13627d9cecdffa8846a0a72223db8f11..6d4bbcee55b6b3cf261b547eba032724e08e05fe 100644
--- a/job-node.yaml
+++ b/job-node.yaml
@@ -10,7 +10,7 @@ spec:
       containers:
         - name: kube-bench
           image: aquasec/kube-bench:latest
-          command: ["kube-bench", "node"]
+          command: ["kube-bench", "run", "--targets=node"]
           volumeMounts:
             - name: var-lib-kubelet
               mountPath: /var/lib/kubelet