diff --git a/lib/workers/repository/updates/flatten.js b/lib/workers/repository/updates/flatten.js
index c45ced8d57d3ce718c89a0260681cca7fc21e238..30b851a79f68d209a1fc1b2f269c0517f5e200c3 100644
--- a/lib/workers/repository/updates/flatten.js
+++ b/lib/workers/repository/updates/flatten.js
@@ -55,5 +55,7 @@ function flattenUpdates(config, packageFiles) {
       updates.push(lockFileConfig);
     }
   }
-  return updates.map(update => filterConfig(update, 'branch'));
+  return updates
+    .filter(update => update.enabled)
+    .map(update => filterConfig(update, 'branch'));
 }