* Store repoIsOnboarded in config

* Use package file renovate config for onboarding

Closes #368

* Add branchName to mergeRenovateJson

* Split onboarding into branch and PR

* Update onboarding description

* remove snapshot

* Update tests

* Update onboarding text

* Group together pins

* Install github-url-from-git

* Get repositoryUrl from npm

* Don’t delete excess pins

* Update configuration.md

* Update tests

* Get repositoryUrl from npm

Closes #350

* Generate repository url from npm query

Closes #350

* Move package-file worker

* rename to renovatePackageFile

* Move packageJson

* Add getDepTypeConfig

* Add

* Revert "Add"

This reverts commit d034e6149af90caf57de3f1b5069674fd8537bd3.

* Refactor versions

* rename findPackageFileUpgrades

* rename versions

* packageWorker

* Refactor promises

* move snapshots

* Rename

* Refactor versions

* Refactor

* Finish package worker

* Major refactor

* Remove worker tests

* package/versions

* Finish packageWorker tests

* package-json test

* Finish dep-type tests

* Add back package-json helper test

* Refactor package-file

* Add back branch and pr

* Add back remaining worker tests

* update tests

* remove snapshot

* Fix dep-type coverage

* Remove old tests

* Coverage

* Add subdirectory

* Move apis tests

* Move onboarding

* Move more apis functions

* Move upgrades

* Refactor index

* Renames

* Set levels in definitions

* Rename global worker

* getRepoConfig use options levels

* Refactor packageFileConfig

* Add onboarding configuration

* Filter GitHub App repositories list if configured via CLI

Closes #354

* Fix existing tests

* Add new test

Closes #352 

* Update platform.js

* Update repository.js

* Automerge pinned upgrades

Closes #348

* Update test snapshots

* Move to subdir

* Downgrade eslint to 3

* Refactor api and config usage

* Refactor mergeRenovateJson

* Test mergeRenovateJson

* getOnboardingStatus tests

* Refactor repository structure

* Refactor config.logger

* Revert "Refactor config.logger"

This reverts commit 6d7f81af6ee284d01aab811dab7eb05c2274edf3.

* Refactor repository logging

* Refactor try/catch

* Refactor platform and onboarding

* Refactor setNpmrc

* Fix github logger

* npm api use config.logger

* Refactor repo worker logger

* Refactor repo worker

* Refactor branched upgrades

* Repository refactoring

* Move some debug logging to trace

* Deprecate fileName

* Refactor upgrades

* Refactor repository logs

* More repository log refactoring

* Refactor repository location

* Revert "Refactor repository location"

This reverts commit faecbf29516737a2752de54103c0228b9112a51c.

* Fix tests

* mergeRenovateJson

* Recombine repository worker

* Add initApis tests

* add detectPackageFiles tests

* Add determineRepoUpgrades tests

* start groupUpgradesByBranch tests

* add test

* add test

* Finish groupUpgradesByBranch coverage

* Test updateBranchesSequentially

* Finish repo coverage

* Finish branch worker coverage

* Finish workers coverage

* Fix isPin

* Complete workers coverage

* Finish helpers coverage

* Add gitlab api tests

* getBranchStatus tests

* test createPr

* start getPr testing

* getPr

* update and merge PR tests

* getFile

* getFileContent tests

* getFileJson tests

* createFile

* updateFile

* createBranch

* commitFilesToBranch

* update yarn

* Update yarn

Closes #228

* Fix github api coverage

* Fix npm api coverage

* Fix renovate init function coverage

* Start gitlab tests

* gitlab initRepo tests

* findFilePaths

* Add branchExists tests

* Fix branch worker coverage

* pr worker

* Refactor repository functions

* Refactor gitlab getRepos